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Sunday, October 30, 2016

Clinical Microbiology HW#10



Major Action Modes of Antimicrobial Drugs – Foundation Figure 20.2 Bacterial Resistance to Antibiotics – Foundation Figure 20.20
The goal of antimicrobial treatment is to kill or inhibit the growth of microbes without damaging the host. This is referred to as selective toxicity. To achieve selective toxicity, antimicrobial drugs generally target bacterial cell structures, enzymes, or processes that are unique to the microbe and not found in host cells. In seeking targets that are unique to the microbes, developers of antimicrobial drugs must consider the differences between prokaryotic and eukaryotic cells. Those structures that are exclusive to or distinctly different in prokaryotic cells are likely targets for antibacterial drugs.
Figure 20.2
1.      Inhibition of cell wall synthesis: penicillins, cephalosporins, bacitracin, vancomycin
2.      Inhibition of protein synthesis: chloramphenicol, eruthromycin, tetracyclines, streptomycin
3.      Inhibition of nucleic acid replication and transcription: quinolones, rifampin
4.      Injury to plasma membrane: polymyxin B
5.      Inhibition of essential metabolite synthesis: sulfanilamide, trimethroprim
Note:
Antimicrobial drugs target certain essential functions of the microbe. Mechanisms of action include inhibiting cell wall synthesis, inhibiting protein synthesis, inhibiting nucleic acid synthesis, injuring the plasma membrane, or inhibiting synthesis of essential metabolites. The antimicrobial drug mut not interfere with essential functions of the microbe’s host.
Figure 20.20
1.      Blocking entry
2.      Inactivation by enzymes
3.      Alteration of target molecule
4.      Efflux of antibiotic
Note:
·         There are only a few mechanisms of microbial resistance to antimicrobial agents: blocking the drug’s entry into the cell, inactivation of the drug by enzymes, alteration of the drug’s target site, efflux of the drug from the cell, or alteration of the metabolic pathways of the host.
·         The mechanisms of bacterial resistance to antibiotics are limited. Knowledge of these mechanisms is critical for understanding the limitations of antibiotic use.

1. Potential Targets of Antibacterial Drugs
Identify potential targets of antimicrobial drugs.
Top to bottom; Left to right
Inhibition of cell wall synthesis
Interference with DNA replication
Interference with transcription
Interference with translation
Inhibition of synthesis of essential metabolites
Injury to plasma membrane
**You have correctly identified the major targets of antimicrobial drugs. These include inhibition of cell wall synthesis and interference with cell membrane permeability. Some antimicrobial drugs interfere with enzymes necessary for the synthesis of various metabolites. There are antimicrobials that interfere with DNA replication, as well as those that interfere with transcription (synthesis of RNA using the DNA template). Lastly, there are a number of antibiotics that interfere with some aspect of protein synthesis (translation).

Some of the broader targets of antimicrobials (such as cell wall synthesis or protein synthesis) are made up of a series of steps or multiple separate components that are eventually assembled to form the final product. For example, think about the bacterial cell wall and the variety of substances that must be synthesized to form the wall. Cell wall synthesis presents multiple potential targets for antimicrobial activity. The same is true of protein synthesis.

2. How Do Antimicrobial Drugs Inhibit Bacterial Growth?
Identify the general mechanism of inhibition for the antimicrobial actions.
·         inhibiting cell wall synthesis
o   inhibiting synthesis of peptide cross-links
o   inhibiting bonding of N-acetyl glucosamine to N-acetylmuramic acid
o   inhibiting lipopolysaccharide synthesis
o   inhibiting mycolic acid synthesis
·         injuring the plasma membrane
o   inhibiting fatty acid synthesis
·         interfering with DNA replication
o   interfering with DNA polymerase
o   inhibiting DNA gyrase
·         interfering with RNA synthesis (transcription)
o   interfering with RNA polymerase
·         interfering with protein synthesis
o   interfering with activity of 30s ribosomal subunit
o   interfering with activity of 50s ribosomal subunit
o   interfering with attachment of tRNA to mRNA
o   interfering with peptide bond formation, catalyzed by the ribosome
** You have correctly associated each of the inhibitory mechanisms with their broader activity.

Most people have heard of penicillin, the first major antibiotic discovered and developed. There are actually over 50 different antibiotics in the penicillin, or “cillin,” group of antibiotics. All of the members of this group share a structural feature referred to as the common nucleus, within which is a chemical group referred to as the beta-lactam ring. The “cillins” differ in the side chain attached to the common nucleus. The different side chains alter the spectrum as well as the stability of the antibiotic. All of the “cillins” interfere with the peptide cross-linking that stabilizes peptidoglycan cell walls. Note the four different “cillins” illustrated here.

3. The Penicillins
All penicillins, or “cillins,” share several structural features but differ in others. This activity asks that you identify several features common to all “cillin” antibiotics.

**You have correctly identified the different parts of the “cillin” molecule. Any antibiotic that has this common nucleus is a type of penicillin. The beta-lactam ring portion of the molecule is the target of beta-lactamase enzymes (also known as penicillinase) that are made by some bacteria. These bacteria are able to break the beta-lactam ring and inactivate the antibiotic.

4. Antibiotics That Inhibit Protein Synthesis
There are a large number of antibiotics that inhibit protein synthesis at 70s ribosomes found in bacterial cells but do not interfere with protein synthesis at the 80s ribosomes found in eukaryotic cells. Some of these antibiotics bind to the smaller ribosomal subunit and interfere with the reading of the mRNA code, whereas others bind to the larger ribosomal subunit and inhibit the formation of peptide bonds. Unfortunately, some of the antibiotics that inhibit protein synthesis in bacteria exhibit some toxicity to the eukaryotic host cells as well. What is the most likely reason for this toxicity to the host cell?
These antibiotics interfere with protein synthesis within eukaryotic mitochondria
**Eukaryotic mitochondria have 70s ribosomes, composed of 50s and 30s subunits, which are very similar to the ribosomes of bacterial cells. Some of the antibiotics that target bacterial ribosomes will cause some toxicity in eukaryotic cells because of their effects on the mitochondrial ribosomes.

A substantial amount of progress has been made in the development of antibacterial drugs. The search for new antibiotics is critical, however, as bacteria continue to develop resistance to currently used antibiotics. Resistance typically arises by mutation, and once microorganisms have become resistant, the continued use of antibiotics enables those that have developed resistance to survive at the expense of those that are susceptible. Over time, this selection of the resistant strains gives rise to their predominance in the bacterial population. Antibiotic resistance can spread among bacterial populations both vertically (by binary fission) and horizontally (via genetic transfer mechanisms)

5. Mechanisms of Antibiotic Resistance, Part 1
Consider the different mechanisms through which antibiotics inhibit microbial growth, and consider what changes in the microbe might enable it to resist the inhibitory effects of antibiotics.
Altered porins in cell wall, which block passage of antibiotic through cell wall.
Production of an enzyme that destroys the antibiotic.
Microbe develops transport mechanism in plasma membrane that rapidly pumps antibiotic out of the bacterial cell.
Modified target site, such that an antibiotic is unable to bind to its target.

6. Mechanisms of Antibiotic Resistance, Part 2
Top to bottom.
Entry of antibiotic into the cell is blocked.
Cellular enzyme inactivates an antibiotic.
Target site to which antibiotic binds is altered.
Efflux mechanism pumps antibiotic out of the cell.
**The figure illustrates the four basic mechanisms that enable microorganisms to resist the inhibitory or lethal effects of antibiotics.

Antibiotic resistance has become a serious problem in health care that continues to worsen. Organisms such as MRSA (methicillin-resistant Staphylococcus aureus), VRE (vancomycin-resistant Enterococcus), and XDR-TB (extensively drug-resistant tuberculosis) are in the news almost every week as their frequency increases in both hospitals and the community. The names MRSA and VRE really don’t tell the entire story. These two bacterial strains are resistant to more than methicillin (MRSA) or vancomycin (VRE); they exhibit resistance to numerous different classes of antibiotics, which greatly complicates treatment of infections.

7. Examples of Antibiotic Resistance
There are numerous examples of microorganisms displaying each of the four major resistance mechanisms. In this activity, you are asked to identify the mechanism that each example best illustrates.
·         Enzymatic inactivation of the antibiotic
o   Many strains of Neisseria gonorrhoeae are resistant to penicillin  because of the production of beta-lactamases.
·         Prevention of penetration to the target site within the microbe
o   Resistance to tetracycline may result from modified pore proteins in the outer membrane that form a porin too small for the tetracycline to pass through
·         Alteration of the drug’s target site
o   Resistance to clindamycin develops when mutations in bacteria alter the ribosomal binding site to which clindamycin would normally bind
o   MRSA (methicillin-resistant Staphylococcus aureus) is resistant to all beta-lactam drugs because of a mutation in its penicillin-binding protein (PBP)
·         Rapid efflux of the antibiotic
o   Pseudomonas aruginosa has membrane pumps that export a number of different antibiotics from its cells

8. How Do Microorganisms Acquire Antibiotic Resistance?
Identify the statements below that accurately describe the mechanisms through which organisms acquire antibiotic resistance.
Antibiotic-resistance genes can be passed horizontally via transduction.
Antibiotic resistance is readily transmitted to the next generation during binary fission.
Mutations are the ultimate source of antibiotic-resistance genes.
Antibiotic-resistance genes can be passed horizontally via bacterial conjugation.
Antibiotics select for those microbes that have developed resistance, increasing their frequency in the bacterial population.
Antibiotic-resistance genes can be passed from one bacterium to another by bacterial transformation.
**It is important to understand that resistance typically originates through spontaneous mutations and then can spread horizontally through bacterial transformation, conjugation, and transduction and vertically through binary fission. Antibiotic use provides the selective pressure that reduces the number of antibiotic-susceptible bacteria, resulting in an increase in the number of antibiotic-resistant strains. Antibiotics don’t cause the DNA changes that bring about the resistance, but rather provide a selective environment in which only those microbes that are resistant can proliferate.

Microbiology Animation: Chemotherapeutic Agents: Modes of Action
1. What is meant by selective toxicity?
Chemotherapeutic agents should act against the pathogen and not the host.

2. Why are chemotherapeutic agents that work on the peptidoglycan cell wall of bacteria a good choice of drug?
Humans and other animal hosts lack peptidoglycan cell walls.

3. Why is polymyxin only used on the skin?
It can also damage living human cell membranes, but the drug is safely used on the skin, where the outer layers of cells are dead.         

4. Quinolones and fluoroquinolones act against what bacterial target?
DNA gyrase

5. Why is it difficult to find good chemotherapeutic agents against viruses?
Viruses depend on the host cell's machinery, so it is hard to find a viral target that would leave the host cell unaffected.

Microbiology Animation: Antibiotic Resistance: Forms of Resistance
1. Which antibiotic is overcome by beta-lactamases?
Penicillin

2. How might efflux pumps increase antibiotic resistance in bacteria?
Resistant bacteria can have more efflux pumps, and can have less specific efflux pumps.    

3. Bacteria that are resistant to sulfonamide have enzymes that have a greater affinity for what?
PABA

4. Why would an efflux pump for penicillin located on a bacterial cell membrane not be effective at providing resistance to the drug?
Penicillin disrupts the cell wall, which is located outside of the cell membrane

5. Membrane transport proteins are required for which mode(s) of antibiotic resistance?
Efflux pumps, beta-lactamases, and modification of porins all utilize membrane transport proteins.

Chapter 20 Reading Questions
1. Which of the following is an antiprotozoan drug that interferes with anaerobic metabolism?
Metronidazole

2. Why is it more difficult to treat viral infections than it is to treat bacterial infections?
viruses use the host cell's processes to carry out their own reproduction

3. Consider a Kirby-Bauer disk-diffusion assay. If you put penicillin and streptomycin disks adjacent to one another, the zone of inhibition is greater than that obtained by either disk alone. This is an example of __________.
Synergism

Chapter 20
1. A drug that inhibits mitosis, such as griseofulvin, would be more effective against
Fungi

2. Most of the available antimicrobial agents are effective against
Bacteria

3. The following data were obtained from a broth dilution test.

Concentration of Antibiotic X

Growth
Growth in Subculture
2 μg/ml
+
+
10 μg/ml
-
+
15 μg/ml
-
-
25 μg/ml
-
-
In the table, the minimal bactericidal concentration of antibiotic X is
15 ug/ml

4. The following data were obtained from a broth dilution test.
Concentration of Antibiotic X
Growth
Growth in
Subculture
2 μg/ml
+
+
10 μg/ml
-
+
15 μg/ml
-
-
25 μg/ml
-
-
In the table, the minimal inhibitory concentration of antibiotic X is
10 ug/ml

5. Which of the following antibiotics does NOT interfere with cell wall synthesis?
Macrolides

6. Protozoan and helminthic diseases are difficult to treat because
their cells are structurally and functionally similar to human cells.

7. The following results were obtained from a disk-diffusion test for microbial
susceptibility to antibiotics. Staphylococcus aureus was the test organism.
Antibiotic
Zone of Inhibition
A
3 mm
B
7 mm
C
0 mm
D
10 mm
In the table, the antibiotic that exhibited bactericidal action was
The answer cannot be determined based on the information provided.

8. The following results were obtained from a disk-diffusion test for microbial
susceptibility to antibiotics. Staphylococcus aureus was the test organism.
Antibiotic
Zone of Inhibition
A
3 mm
B
7 mm
C
0 mm
D
10 mm
In the table, which antibiotic would be most useful for treating a Salmonella infection?
The answer cannot be determined based on the information provided.

9. The following data were obtained from a broth dilution test:
Concentration of Antibiotic X Growth
2.0 μg/ml
-
1.0 μg/ml
-
0.5 μg/ml
-
0.25 μg/ml
+
0.125 μg/ml
+
0
+
Bacteria from the 0.25 μg/ml tube were transferred to new growth media
containing antibiotic X with the following results:
Concentration of Antibiotic X Growth
2.0 μg/ml
-
1.0 μg/ml
+
0.5 μg/ml
+
0.25 μg/ml
+
The data in the table show that these bacteria
developed resistance to antibiotics.

10. The structures of the influenza drug Tamiflu and sialic acid, the substrate for influenza viruss neuramidase, are shown in the figure. What is the method of action of Tamiflu?
Competitive inhibition

11. An antibiotic that attacks the LPS layer would be expected to have a narrow spectrum of activity.
TRUE

12. Both trimethoprim and sulfamethoxazole inhibit reactions along the same metabolic pathway.
TRUE

Russia, You Take My Breath Away
Caleb Bakersfield, a 42-year-old real estate agent, had just returned from a vacation to Russia. His childhood had been rough because of an alcoholic and abusive father, and Caleb had started his own drug addiction in his early teens. By his early twenties, he was addicted to heroin, lived on the streets, and frequently used dirty needles. In his thirties, Caleb joined a program to beat his addiction and to turn his life around. The trip to Russia was to celebrate a decade of being clean.
Less than two months after his trip, Caleb started having respiratory complications, including a frequent cough and shortness of breath. He figured it was most likely a respiratory infection and made an appointment with his physician.
After listening to Caleb’s lungs, Dr. Bell determines that Caleb most likely has a lower respiratory infection and prescribes the antibiotic azithromycin. Dr. Bell reminds Caleb that it is important to complete his entire course of antibiotics, even if he feels better before he finishes all of the medicine. Dr. Bell also collects a sputum sample (mucus coughed up from the lower respiratory tract) and sends it to the laboratory for evaluation.
1. Why does the physician start Caleb on the antibiotic azithromycin before laboratory results come back?
Antibiotic therapy is started with a broad-spectrum antibiotic because broad-spectrum antibiotics are effective against many gram-positive and many gram-negative bacteria.
** Azithromycin is a semisynthetic broad-spectrum antibiotic that can be used as an alternative to penicillin, is broader in range than erythromycin, and has better tissue penetration. Dr. Bell most likely assumes that the bacterium causing Caleb’s infection will be susceptible to azithromycin and that this drug should clear the infection.

2. Which of the following choices correctly matches the class of antibiotic and its mode of action?
Aminoglycosides and tetracyclines are inhibitors of protein synthesis.
Sulfonamides inhibit the synthesis of essential metabolites.
** Antibacterial drugs are often categorized by their mode of action against the target microbe. The following make up a short list of antibacterial drugs that are commonly used to treat infections. Penicillins (natural and semisynthetic) and cephalosporins are commonly used to inhibit synthesis of the cell wall. Chloramphenicol, aminoglycosides, tetracyclines, and macrolides are common inhibitors of protein synthesis. Polymyxin B and lipopeptides cause damage to the plasma membrane. Rifamycins and quinolones inhibit nucleic acid synthesis. Sulfonamides inhibit metabolic pathways. Combinations of these drugs can also be used to increase efficacy.

The azithromycin does not clear Caleb’s respiratory infection. In fact, his cough is getting worse, and on several occasions his sputum has contained blood. Caleb schedules another appointment with Dr. Bell. This time, the two thoroughly discuss his recent travel to Russia, his medical history, and his time spent as an IV (intravenous) drug user. Dr. Bell requests that Caleb provide samples of sputum and blood and that he undergo a tuberculin skin test. Image A shows what Caleb’s sputum sample looks like on the microscope.
Dr. Bell confirms his diagnosis of tuberculosis using an X-ray image of Caleb’s lungs and a rapid diagnostic test (Xpert MTB/RIF), which uses automated PCR to detect M. tuberculosis in 90 minutes. Dr. Bell also receives the results of Caleb’s blood test, which confirms that he is also infected with HIV, most likely contracted from a dirty needle. The HIV has weakened Caleb’s immune system, rendering it unable to fight off the M. tuberculosis pathogen. His X-ray film shows the presence of a walled-off lesion of bacterial cells (a tubercle) in the lungs.
Dr. Bell meets with Caleb to discuss treatment options for his infections. Given that he is infected with HIV, treatment for the tuberculosis is imperative but depends greatly on the susceptibility of the M. tuberculosis to the available antibiotics. Dr. Bell also starts Caleb on HIV therapy.

3. If Caleb’s strain of M. tuberculosis is sensitive to antibiotic treatment, which of the following could be used to treat his infection?
streptomycin
isoniazid and ethambutol
rifampin
** Treatment of susceptible strains of M. tuberculosis typically includes a 6-month regimen of isoniazid, ethambutol, pyrasinamide, and rifampin. These are considered first-line drugs for the treatment of tuberculosis. If resistance develops, second-line alternatives, such as aminoglycosides, fluoroquinolones, and para-aminosalicylic acid (PAS) can be added to the regimen. In resistant strains, treatment is more difficult.

4. Why does Dr. Bell start Caleb on HIV therapy in addition to the antibiotics used to treat the tuberculosis?
Dr. Bell prescribes Caleb HIV therapy because the virus is not affected by the antibiotics used to treat tuberculosis.
** HIV infections are caused by the human immunodeficiency virus, a RNA virus. Viruses are not susceptible to antibiotics; thus the treatment for Caleb’s tuberculosis would be effective only against the bacterium, M. tuberculosis. Dr. Bell prescribes the HIV therapy and the antibiotics in order to help Caleb’s immune system battle both infections. HIV therapy includes the use of antiretroviral drugs, nucleoside analogs, and nucleotide analogs such as HAART, zidovudine, and tenofovir, respectively. Newer HIV drugs are being created to inhibit viral entry into the cell and to prevent integration of the genome into host DNA. Often, HIV-infected individuals are given a “cocktail” of medications to treat the infection and to help combat antiviral resistance.

Tuberculosis strains that are drug resistant can be defined as multi-drug resistant (MDR) or extensively drug resistant (XDR). Multi-drug-resistant strains are defined as being resistant to the two most effective first-line drugs, rifampin and isoniazid. Extensively drug-resistant strains are defined as being resistant to rifampin, isoniazid, to the most effective second-line drugs (fluoroquinolone), and to at least one of three injectable second-line drugs. Unfortunately, Caleb’s strain of M. tuberculosis is an XDR strain that is untreatable. The tuberculosis infection, in addition to complications from his HIV, leads to his death 6 months after the appearance of his initial symptoms.

5. Which of the following contribute to drug resistance in M. tuberculosis?
Many individuals fail to complete their entire regimen of antibiotics.
Some physicians prescribe the wrong medication, the wrong dosage, or the wrong length of time for treating tuberculosis.
In many areas, tuberculosis antibiotics are unavailable or of poor quality.
** One of the major reasons for drug resistance in M. tuberculosis is the length of antibiotic treatment. It is hard enough to get people to completely finish a course of antibiotics that lasts 7 to 10 days, let alone one that lasts 6 months. Individuals who begin treatment but do not finish only contribute to the resistance problem because the organisms they are harboring and transmitting to others are the ones resistant to treatment. Other factors that contribute to resistance include improper diagnosis and treatment, lack of drug availability, and poor quality of the antibiotics. With the increase in the number of organisms exhibiting resistance, researchers are now developing newer antimicrobials and revisiting ideas from before the antibiotic era.

Chapter 20
1. The following results were obtained from a disk-diffusion test for microbial
susceptibility to antibiotics. Staphylococcus aureus was the test organism.
Antibiotic
Zone of Inhibition
A
3 mm
B
7 mm
C
0 mm
D
10 mm
In the table, the most effective antibiotic tested appears to be
Letter D

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