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Sunday, December 4, 2016

Clinical Microbiology HW#15



Concept Map: Viral Hepatitis

1. Which of the following NOT true for both hepatitis B and hepatitis C infection?
The disease is prevented by vaccination.
**There is a vaccine for hepatitis B.
***TRUE:
The virus can cause a chronic disease.
The infection is transmitted through blood and body fluids.
Diagnosis can be achieved through testing the blood for antibodies.

2. What do hepatitis A and hepatitis B have in common?
Both can be prevented by a vaccine.

3. What organ is most affected by hepatitis B virus?
Liver

Chapter 25 Reading Questions

1. John went to a picnic. He took some leftover chicken and rice home, heated it on the stove, ate it, and got sick two hours later. John thought the heating made his food safe because it would have killed any bacteria present. He didn't know that __________ produces a heat-stable toxin.
Staphylococcus aureus

2. Which is the correct sequence of events regarding the stages of tooth decay? 1. Dentin decay 2. Enamel decay 3. Plaque 4. Pulp decay
3-2-1-4

3. Ergot poisoning __________.
may cause hallucinogenic symptoms

Diseases in Focus Chapter 25 – Male, age 49

Medical History (Hx)
The patient is a male, age 49. He was admitted to the clinic with a high fever, muscle pains (myalgias), and facial swelling around his eyes (periorbital edema). The patient works as a pharmaceutical sales representative based in Hawai'i. He lives in Honolulu, on the island of Oahu. He is married, monogamous, and sexually active, with a 16-year old son. He does not report using drugs of abuse, and rarely drinks alcohol, but does smoke cigarettes (estimates 8 per day). His son has a pet iguana, which he has fed once or twice since his son got it (roughly two years ago). He is allergic to drugs containing sulfonamides. He has a family history of cancer. Within the last year (6 months ago), he and his wife traveled to Thailand to visit extended family. He reports feeling fine during and after his travel. A month ago, he and his family traveled to Maui to attend a street fair celebrating the Thai New Year. While at the fair, he ate several food items from vendors. He felt fine that night; however the following evening he experienced a sudden onset of diarrhea, accompanied by abdominal cramps and heartburn. After a few days, his symptoms faded, and he did not think anything more of the episode. Five days ago, he again rapidly developed frequent, watery diarrhea, myalgias, and a severe headache. Over the next few days, the tissue around his eyes began to swell, and small hemorrhages appeared under his fingernails (splinter hemorrhages). Initial examination shows that he is dehydrated and feverish, with large swollen bags under and around his eyes. No one else in his family is sick, despite the fact that his wife and son were also present and ate food at the street fair.

Differential Diagnoses
Differential diagnosis is the process of identifying a disease from a list of possible diseases that fit the information derived from examining a patient. Your job will be to synthesize information from a patient whose main presenting symptoms are consistent with a microbial disease of the digestive system. Use the "Diseases in Focus" 25.2, 25.3 and 25.4, and 25.5 tables and your knowledge about microbial diseases of the digestive system to identify the patient's risk factors and symptoms, evaluate diagnostic evidence, formulate and test a diagnosis about the pathogen responsible for the patient's woes, and suggest a course of treatment.

1. Identify relevant information
Review the patient's medical history, and then identify risks and concerns that are relevant to your diagnosis (and the patient's treatment).
Relevant:
Risk of vector-borne disease
Risk of travel-related disease exposure
Special concerns for treatment
Not Relevant:
Age-related risk of disease
Occupational risk of disease
Risk of sexually transmitted infection (STI)
Risk of drug-related disease exposure
Risk of genetic/familial disease
Risk of immunocompromised
**Your patient's medical history reveals that he has recently traveled, and that he is in contact with a vector animal associated with the transmission of certain types of infectious disease. Potentially, these factors could help you identify diseases your patient may have come into contact with.

2. Focus your hypothesis
Before you can focus your hypothesis further, you'd like to know more about the diarrheal symptoms your patient has been experiencing. You ask him to describe his bowel movements. He replies that he has been having roughly 10 watery bowel movements a day. You ask him to clarify "watery," and he adds that his movements have been loose with some fluid, but he would not describe them as extremely watery. He has not noticed any blood in his stool.
Based upon your patient's description of his bowel movements, you feel it is LESS likely that your patient has:
dysentery, or a disease with dysentery-like symptoms
cholera, or a disease with cholera-like symptoms
**It does not seem that your patient has a form of cholera, dysentery, or a disease of similar diarrheal symptoms. He could have a form of gastroenteritis, however. You will need to gather more information to solidify a hypothesis.

3. Gather more information
You take a blood sample from your patient, and record his vital signs. As you do this, you decide to ask your patient some details about situations where you believe it is most likely that he acquired his illness. You begin by asking him:
What did he and his family eat at the street fair?
**You ask your patient about what he ate the night of the street fair, and he recalls having eaten a fresh spring roll (spring roll wrapper, cooked rice noodles, sprouts, cabbage, onion, herbs, lime), a plate of pad thai (noodles, cooked chicken, cooked shrimp, cooked egg, fresh sprouts, chopped peanuts), a side of larb salad (ground pork, toasted rice, fish sauce, basil, mint, lime, chilies), and chicken satay (chicken on a skewer with peanut sauce). At the time, he had noted that his chicken skewer had seemed a little pink, but it "tasted fine," and he had eaten the entire thing.
You suspect that your patient may have acquired a foodborne illness. Many diseases of the digestive system are the result of ingesting food that is not properly prepared, stored, or fully-cooked. Since your patient ate several items that could explain the symptoms and timing of his illness, it is possible that he acquired his condition via ingestion of contaminated foods.

Refine your hypothesis
To further refine your hypothesis, you'd like to know what your patient's family ate the night of the street fair.

Fresh Spring Roll (each person had their own)
Pad Thai
Larb Salad
Chicken Satay (each person had their own)
Mango with Sticky Rice
Your Patient
x
x
x
x
-
Wife
x
x
-
x
x
Son
x
x
-
-
x
The table above summarizes what each family member ate.

4. Considering the food items each family member ate, which dish do you think is the most likely source of infection?
The larb salad
**Since your patient is the only family member to have eaten the larb salad, you are suspicious that this item is responsible for his illness. Larb is a meat salad consisting primarily of a ground meat (in this case pork), as well as fish sauce, toasted rice, herbs, spices, lime, and chilies.
You know that contaminated pork can transmit a number of infectious diseases. After a quick review of the literature, you decide to highlight following the pork-related pathogens as potential causes for your patient's illness:
Pathogens Associated with Pork
Bacteria
Escherichia coli, Listeria monocytogenes, Salmonella sp., Staphylococcus aureus, Yersinia enterocolitica
Viruses
Hepatitis E virus
Helminths
Taenia solium, Trichinella spiralis

5. Interpret results
Your patient's blood test returns from the lab. Many of his levels are within a normal range; however his complete blood count (CBC) shows an elevation in the number of eosinophils (eosinophilia) in his blood, as well as an overall elevation in total white blood cell numbers (leukocytosis). He also has higher than normal levels of creatine kinase and lactic dehydrogenase, indicating some sort of tissue damage. Which of the following hypotheses does this evidence best support?
a multicellular parasite
**Elevated numbers of eosinophils could be indicative of an active infection by a multicellular parasite.

6. Refine your hypothesis
Considering the bloodwork, time-course, and symptoms of your patient's disease, which pathogen do you suspect he has contracted?
Trichinella spiralis
**The symptoms of Trichinella spiralis infection are the best fit for what your patient has been experiencing.

Select a course of action.
Now that you have a good idea about what pathogen your patient might be harboring, you would like to run some diagnostics that will allow you to confirm the presence of Trichinella spiralis. You collect a blood and a stool sample.

7. What diagnostics would you like to perform on one or both of these samples?
serology (ELISA)
**You order serology for Trichinella antibodies to be performed on your patient's samples, as well as a quantitative immunoglobulin test.

8. Predict your results
During an infection, the levels of more than one class of immunoglobulins may increase, or sometimes decrease. An increase in which of the following classes would best support the hypothesis that your patient has a helminth infection?
IgE
** IgE can be greatly increased during T. spiralis infection. This characteristic can be very useful for a diagnosis of trichinellosis, especially when combined with positive serology, muscle biopsy, and/or a combination of other classic trichinellosis symptoms (facial and/or eyelid edema, hemorrhages under the nails (subungual hemorrhage), myalgia, and diarrhea).

9. Treat the disease
The results of your patient's ELISA return positive for T. spiralis. Your hypothesis is confirmed: your patient has trichinellosis!
Now that you've identified your patient's disease, fill out his prescription for treatment:
Mebendazole and corticosteroids
** You prescribe your patient mebendazole and a course of corticosteroids. You also notify the health authorities of your diagnosis, and subsequently call several of the hospitals on Maui where you believe your patient contracted the disease. The staff of one of the largest hospitals tells you that they have had 28 other cases of trichinellosis. The outbreak was eventually traced to the larb dish your patient ate at the street fair. The pork was ground in a meat grinder that had also been used to make sausage from at least one infected wild hog. Traditionally, the meat in larb salad can be served raw with lime juice, or lightly cooked. In this case, the infected meat was not cooked long enough to kill the encysted worms, and thus several people contracted the parasites. Trichinellosis in wild hogs can be difficult to eradicate as rodents can also serve as a reservoir for the disease. The parasite is passed when hogs or other animals eat the meat of infected animals (rats, pork, etc.). This sort of transmission cycle means that omnivorous and carnivorous animals have a high incidence of infection. Trichinellosis is frequently found in animals such as bears, mountain lions, foxes, and seals. This has been a particular problem for Inuit and Native American cultures that traditionally consume these animals. Trichinellosis is also a common problem in Southeast Asia, where raw or lightly cooked pork dishes are part of many traditional celebrations.

Chapter 25

1. Clostridium difficile-associated diarrhea is usually preceded by
extended use of antibiotics

2. Which of the following diseases of the gastrointestinal system is transmitted by the respiratory route?
Mumps

3. Which of the following statements about staphylococcal food poisoning is FALSE?
It can be prevented by heating foods to 50°C for 15 minutes.
**TRUE:
It is treated by replacing water and electrolytes.
It can be prevented by adequate refrigeration of food.
It is characterized by rapid onset and short duration of symptoms.
It is caused by ingesting an enterotoxin.

4. Which of the following organisms is likely to be transmitted via contaminated shrimp?
Vibrio parahaemolyticus

5. Aflatoxin is a(n) ________ associated with ingestion of contaminated ________.
mycotoxin; peanuts

6. "Rice water stools" are characteristic of
Cholera

7. Epidemics related to bacterial infection of the digestive system are typically caused by
contaminated food and water.

8. Many bacterial infections of the lower digestive tract are treated with
water and electrolytes.

9. Bacterial intoxications differ from bacterial infections of the digestive system in that intoxications
have shorter incubation times

10. Helicobacter pylori can grow in the stomach because it
possesses an enzyme that neutralizes HCl.

11. Following a county fair, 160 persons complained of gastrointestinal symptoms. Symptoms included diarrhea (84 percent), abdominal cramps (96 percent), nausea (84 percent), vomiting (82 percent), body aches (50 percent), fever (60 percent; median body temperature = 38.3°C); median duration of illness 6 days (range 10 hr to 13 days).
In the situation, fecal samples were found to be negative when cultured. The next step in diagnosing the cause of illness would be
microscopic examination of fecess for oocysts.

12.
Food
Relative Risk
Black beans
0.58
Corn soup
0.75
Jalapeño peppers
34.13
Roma tomatoes
5.40
The relative risks shown in the table were calculated for foods suspected of transmitting Salmonella. Which food is the most likely source of infection?
jalapeño peppers

The Case of the Hidden Souvenir
Michael was excited when his boss sent him to work on a 6-month project with the Vice President of International Affairs at their corporation in Beijing, China. Before leaving the United States, he visited his family doctor for a complete physical and to receive his immunizations. The physician reviewed Michael’s medical history and current lab results and declared that he was a healthy 32-year-old. Michael adjusted well to the move and made many new friends. They would often get together on the weekends to go swimming at a nearby lake, to play volleyball at the local park, or to watch movies and cook dinner. He quickly found that his favorite meal was a stir-fry containing a mixture of pork, fresh raw vegetables, and noodles. He would eat this combination of foods three to four times a week.
To his surprise, within 3 months of moving to China, Michael started losing weight. He was not trying to lose weight and when asked about his diet, Michael would say that he ate all the time. At first, he thought the weight loss was just a result of his metabolism adjusting to his new Asian diet and was not a cause for concern. However, after 2 months of continuous weight loss, the non-stop eating was replaced by nausea and slight abdominal pain. At this time, Michael began to think something might be wrong.

Michael scheduled an appointment with Dr. Clark at the local medical center. During his appointment, the two of them discussed where Michael had traveled since he had been in China, the types of foods he had eaten, the specifics of his exercise regimen, and his extracurricular activities. They also discussed the lack of symptoms other than the weight loss and recent bouts of nausea. After talking with Michael, Dr. Clark requested that multiple stool specimen be sent to the laboratory for examination. He also ordered serological testing of Michael’s blood to determine his antibody titer levels. He was concerned that Michael may have an intestinal parasite infection, even though many are asymptomatic.

1. Why does Dr. Clark request stool samples for examination?
He will have the laboratory prepare the samples for an ova and parasite (O&P) exam. Fresh or preserved stool samples can be observed microscopically for the presence of parasites or their eggs/cysts.
Tapeworms are pathogens of the gastrointestinal tract; as a natural progression of digestion some of the tapeworm pieces will be expelled along with fecal matter.
** Investigation of stool samples is an important diagnostic tool for physicians and other medical personnel. The stool is prepared in such a way that any parasite eggs or proglottids remain in the sample. After processing, the sample is placed on a microscope slide for observation. Staining can be performed, but is not always necessary. Morphological examination of any specimen found in the stool will help with identification.
Preliminary laboratory results rule out bacterial, viral, and protozoan infections and indicate that Michael is most likely infected with a helminthic parasite.

2. Which of the following represents the MOST LIKELY route of transmission for Michael’s infection?
Foodborne - Eating undercooked, unwashed, or otherwise contaminated food that contained parasitic propagules
** The most likely mode of transmission in Michael’s case was through the undercooked pork that he ate in his stir-fry. Humans are a definitive host for the pork tapeworm and are infected when they ingest larval cysts embedded in the muscle tissue of the pig. This transmission cycle is common in Africa, Asia, and Latin America. Interestingly, pigs in the United States are virtually parasite-free, and pork tapeworm infections are transmitted person-to-person via the fecal-oral route. Eggs from infected people with poor hygiene can be ingested by others, which allows the life cycle to continue without the pigs as an intermediate host.

3. Which of the following organisms is most likely the causative agent of Michael’s tapeworm infection?
Taenia solium
** T. solium is the tapeworm associated with eating undercooked pork. Eggs and proglottids from the adult tapeworm are released in the intestines and can be observed in fecal samples with a light microscope. Diagnosis is based on these findings.
Microscopic analysis of Michael’s stool sample confirmed the presence of tapeworm eggs and proglottids in the genus, Taenia. Image A is the microscopic view of tapeworm eggs from a fecal sample. Image B is the microscopic view of a proglottid from a fecal sample. Dr. Clark informed Michael that given his diet history, he is most likely infected with the pork tapeworm, T. solium. A related species, T. saginata, is associated with eating raw beef and its scolex differs from that of T. solium. Image C is T. solium, the pork tapeworm. Notice how T. solium has a row of hooks. These structures are not found in T. saginata. Image D is Enterobius vermicularis, a roundworm.

4. Compare the anatomy of the tapeworm (Image C) to the anatomy of the roundworm (Image D). Given that both are parasitic worms, which of the following reasons best explains why the tapeworm is flat?
Tapeworms utilize diffusion to absorb nutrients from the host’s digestive system.
** The tapeworm’s high surface-area-to-volume ratio is an adaptation to utilize diffusion in the nutrient-rich environment of the host’s intestine. These worms lack digestive structures and must rely on the host to completely digest food before it is absorbed by the worm via its outer layer called a cuticle. Roundworms have a more complex digestive system and are capable of digesting food that has only been partially digested by the host. This decreases the need for a high surface-area-to-volume ratio because diffusion of nutrients is no longer an issue.

5. What is the correct sequence of events for the life cycle of the pork tapeworm, T. solium?
Eggs are produced by adult tapeworms living in the definitive host.
Eggs are released to the environment in the feces.
Pig eats grass contaminated, or fertilized, with human feces.
Inside the intermediate host, the eggs mature into larvae and encyst in the hosts muscles.
The definitive host ingests the larvae and becomes infected.
** The adult worm produces thousands of eggs in the human host. These eggs leave the digestive tract via the feces. When pigs eat grass contaminated with, or fertilized by, human feces they become infected with T. solium. The tapeworm eggs mature into larvae that encyst themselves in the muscle tissue of the pig. When humans eat pork that has not been cooked to high enough temperatures, they become infected with the tapeworm.
Michael’s blood work reveals an increase in eosinophils, which are granular white blood cells, and his IgE antibodies. Along with the microscopic analysis of the stool specimen, these lab results confirm the diagnosis of a tapeworm infection

6. Why do we see an increase in the levels of IgE antibody in Michael’s serum?
IgE is the class of antibodies involved in hypersensitivities such as allergies and parasitic infections.
**IgE is typically found in very low amounts in the blood serum. It increases in response to allergic reactions and parasitic infections. There is also a correlation with an increase in IgE amounts and the increase of eosinophils in a blood smear. Eosinophils are white blood cells that release peroxide ions to destroy the parasite from the outside.

7. What is the treatment that Dr. Clark will most likely recommend?
Praziquantel or albendazole, drugs that target eukaryotic parasites with minimal side effects in the host.
** Praziquantel and albendazole are both anti-helminthic drugs. Praziquantel is effective against tapeworms because it changes the permeability of the cuticle and blocks nutrient uptake. During this process the drug also uncovers surface antigens that stimulate an immune response. Albendazole is a broad-spectrum anti-helminthic drug that also blocks nutrient uptake by inhibiting microtubule formation in the cytoplasm. It is used commonly to treat livestock as well.
After treatment, Dr. Clark wanted to monitor Michael’s progress to make sure the tapeworm infection was completely cleared. He also ordered Michael to get a computed tomography (CT) scan and a magnetic resonance imaging (MRI) scan. These scans confirmed that Michael’s infection was localized to the digestive tract and the tapeworms had not spread beyond that point.

8. Why was Dr. Clark worried about tapeworm infection in other body sites?
When tapeworm larvae escape the stomach, they can travel to other parts of the body such as muscles, the liver, the eye, and even the brain to form cysticerci.
The presence of T. solium in the brain can result in neurocysticercosis, a serious condition which has symptoms resembling those of brain tumors or epilepsy.
** Tapeworms in the intestinal tract are usually asymptomatic. Humans are the definitive host and support the growth of adult tapeworms. Pigs are intermediate hosts that continue the life cycle of T. solium. Occasionally, the human host can become an intermediate host. Larvae escape the stomach and migrate to other tissues in the body. Once in other tissues, the larvae form cysts called cysticerci. These cysts can cause problems, especially in the eye and in the brain.

Chapter 25

1. Bacterial infections, but not intoxications, can cause diarrhea.
FALSE

2. An outbreak of viral gastroenteritis occurs in a pediatrics ward. Rotavirus is the most likely causative agent.
TRUE

Big Picture Coaching Activity: Cholera after natural disasters

Cody is an epidemiologist working for the Centers for Disease Control and Prevention (CDC) in Atlanta. He is on his way to a local college to give a presentation on cholera to the members of the Microbiology Club. The focus of his talk is a cholera epidemic in Haiti that followed an earthquake in 2010.

1. Causative agent of cholera
Cholera is a waterborne pathogen that causes severe gastrointestinal disease. The organism is a slightly curved, gram-negative rod that likes to grow in the small intestine and causes watery stools and violent vomiting. Complete the following statement: Cholera is caused by the bacterium, __________ and produces __________ that result in severe diarrhea.
Vibrio cholera; exotoxins
** The causative agent of cholera is Vibrio cholerae. This organism is a curve-shaped, gram-negative rod. It produces cholera toxin, which is an exotoxin that causes infected individuals to experience extreme diarrhea and vomiting.

2. Effect of natural disasters
During his presentation to the Microbiology Club, Cody mentions that the cholera epidemic in 2010 came shortly after an earthquake. He also mentions that other cholera epidemics had occurred following natural disasters such as flooding. Which of the following has the greatest impact on the number of cholera cases after a natural disaster?
sewage contamination in drinking water
** In the Big Picture activity, it mentions that the displacement of people and a loss of clean drinking water is the biggest contributor to cholera outbreaks. Given that cholera is caused by a bacterium found in the gastrointestinal tract, it makes sense that the feces of infected individuals would contain the pathogen. If the feces contaminate the water and then the people drink the water, this can lead to an epidemic. It is important to maintain water purification, especially following a natural disaster.

3. Mechanism of the cholera toxin
The pathogenesis of Vibrio cholerae is due to the organism’s ability to produce cholera toxin. This is an A-B toxin that affects host cells in the small intestine. Which of the following correctly describes the mechanism of the toxin?
The cholera toxin causes the host cells to secrete large amounts of fluids and electrolytes.
** The production of a superantigen and toxic shock syndrome is the mechanism used by staphylococcal enterotoxin.

4. Treatment
In untreated individuals, the mortality rate of cholera can be as high as 50%, but in individuals that are given oral rehydration therapy, fatalities are rare. Oral rehydration therapy involves treating the patients with an oral suspension of salt, sugar, and water. Which of the following choices explains why this suspension is used instead of pure water to treat cholera infections?
The salt and sugar in the rehydration solution will replace lost electrolytes and the water replaces the lost water.
** The oral rehydration solution is used over pure water because the salt and sugar compounds have ions that will replace the lost electrolytes. In the case of cholera, fatalities occur because a patient can lose between 12 and 20 liters of fluids in a day, and the large loss can lead to shock, collapse, and even death. It is very important in this situation to replace the electrolytes and the water that has been lost.

5. Bacterial infection versus intoxication
In this case study, the main focus has been on the organism Vibrio cholerae and the toxin it produces. Many organisms are capable of producing toxins that allow for pathogenesis, while others are able to infect the host directly and cause disease. In this activity, you will place the organism in a bin based on its ability to cause an infection, an intoxication, or both.
Infection: Shigella sonnei; Vibrio cholerae; Escherichia coli; Salmonella enterica
Intoxication: Staphylococcus aureus

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