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Friday, September 16, 2016

Biological Principles 1 -- HW#1.1

STR : variable DNA, unique patterns, identifiable

PCR : polymerase chain reaction

23 pairs of chromosomes

Cell Cycle
G1: growth
S: DNA synthesis
G2: preparation for cell division
M: mitosis -- nuclear division
Cytokinesis: cell division

G2 : chromosomes are composed of sister chromatids in this stage of the cell cycle

Mitosis
Prophase: chromosomes condense, become visible, nuclear membrane disintegrates
Metaphase: chromosomes line up on metaphase plate
Anaphase: sister chromatids separate
Telophase: chromosomes decondense, 2 nuclear membrane form

G1 phase prior to meiosis
      diploid cell: chromosome replicate at S phase and condense at start of meiosis
Meiosis 1: homologous chromosomes separate
Meiosis 2: sister chromatids separate; 4 cells with individual chromosomes

Meiosis 1
Prophase 1:
          chromosomes condense, become visible, nuclear membrane starts to disintegrate, homologous chromosomes pair up (synapse). Crossing over: reciprocal exchanges of DNA from sister chromatids in a homologous pair
Metaphase 1:
            chromosomes line up on metaphase plate, IN PAIRS
Anaphase 1:
          chromosomes separate from their homologous half pair
Telophase 1:
           chromosomes decondense, 2 new nuclear membrane forms
Cytokinesis:
            cell division; 2 cells

Meiosis 2:
Prophase 2:
         chromosomes condenses, become visible, nuclear membrane disintegrates
Metaphase 2:
         chromosomes line up on metaphase plate
Anaphase 2: sister chromatids separate
Telophase 2: chromosomes decondense, nuclear membrane forms
Cytokinesis: cell division; 4 cells

Diploid number: number of chromosomes when they are in pairs; our somatic (body) cells are diploid

Haploid number: half number of diploid cells in our gametes (Sex cells)

Non-Disjunction Error in Meiosis: uneven distribution of chromosomes during anaphase

Independent Assortment: occurs in meiosis 1

For n Pair of chromosomes: 2^n number of possible different gametes

Mendelian Principle 1
Dominance
controlling element for one variant dominates the other variant in the Hybrid F1

Mendelian Principle 2
Segregation
in gametogenesis (formation of sex cells) variants of genes (alleles), segregate to different gametes

Homozygous: alleles same       eg. TT, tt
Heterozygous: alleles different            eg. Tt

Mendelian Patterns:
Dominance      eg. TT x tt
Segregation       eg. Tt x Tt
Independent Assortment

Non-Mendelian Patterns
Gene linkage

CO-Dominance/Incomplete Dominance
Red (CrCr) x Pink (CrCw)

Karyotype
a photographic representation of the chromosomes
reveals the number, size, and form of chromosomes found within an actively dividing cell

Animal Cells: Cleavage furrow
in animal cells, cytokinesis involves the formation of a cleavage furrow, which constricts like a drawstring to separate the cells

Plant Cells: Cell plate
in plant cells, cytokinesis is when vesicles from the Golgi apparatus move along microtubules to the center of the cell and coalesce to form a cell plate, which then forms a cell wall between the two daughter cells

Epistasis
Greek ephistanai, meaning stopping
in some gene interactions, the alleles of one gene mask the expression of the alleles of another gene

Polygenic
quantitative traits usually
means that multiple genes contribute to the outcome of the trait

Linkage: when two genes are close together on the same chromosome, they tend to be transmitted as a unit

Genetic Mapping
the study of the arrangement of genes in a species genome
Genetic Map: the linear order of genes along a chromosome is shown in a chart

Genetic Engineering: direct manipulation of genes for practical applications

Plasmids: small, circular pieces of DNA that are found naturally in many strains of bacteria and exist independently of the bacterial chromosome

Restriction Enzymes
to cut DNA
restriction endonucleases
protect bacterial cells from invasion by viruses by degrading the viral DNA into small fragments

DNA fingerprinting: technology for identifying and distinguishing among individuals based on variation in their DNA

STR
short tandem repeat sequences
short DNA sequences that are repeated many times in a row
amplified when PCR is used for DNA fingerprinting

PCR
polymerase chain reaction
another technique to copy DNA without the aid of vectors and host cells is  process called PCR
goal of PCR: to make many copies of DNA in a defined region, perhaps encompassing a gene or part of a gene

Incomplete Dominance: a heterozygote that carries two different alleles exhibits a phenotype that is intermediate between the corresponding homozygous individuals

Co-Dominance: a single individual expresses two alleles   eg. IAIB -- type AB

Multiple Alleles: although diploid individuals have only two copies of most genes, the majority of genes have three or more variants in natural populations

Chromosomes replicate during interphase

Genes that are linked do not assort independently during meiosis

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